GPRS
latest

Tutorials

  • About gprs package
  • Get started: understanding the data format
  • Before step1:
  • Step1: Unify the data format
  • Setp 2: Generate Plink bfiles (.bim, .bam, .fam)
  • Setp 3-1: Clumping (remove linked SNPs)
  • Setp 3-2: Filter SNPs depends on .clump
  • Setp 4-1: Generate PRS model
  • Setp 4-2: Combined PRS model
  • Setp 5-1: Calculate statistics value of PRS model
  • Setp 5-2: Combined PRS statistics results (Optional)

Examples

  • Example of giant height from Wood et al 2014
  • Example of MEC American Africans

API Reference

  • GPRS
  • GeneAtlasModel
  • GwasModel
GPRS
  • Search

© Copyright 2021, Ying-Chu Lo. Revision b7e31de6.

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